J3_7P48_035

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

7P48|1|a|U|1222, 7P48|1|a|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_035 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1818

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7P48|1|a|C|999
7P48|1|a|U|1000
7P48|1|a|U|1001
7P48|1|a|G|1002
7P48|1|a|A|1003
7P48|1|a|C|1004
7P48|1|a|A|1005
7P48|1|a|U|1006
*
7P48|1|a|A|1055
7P48|1|a|C|1056
7P48|1|a|A|1057
7P48|1|a|G|1058
*
7P48|1|a|C|1220
7P48|1|a|U|1221
7P48|1|a|U|1222
7P48|1|a|A|1223
7P48|1|a|U|1224
7P48|1|a|G|1225

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z