J3_7P7Q_033

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7Q_033 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0852

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7P7Q|1|A|G|1465
7P7Q|1|A|G|1466
7P7Q|1|A|G|1467
7P7Q|1|A|A|1468
7P7Q|1|A|C|1469
7P7Q|1|A|G|1470
*
7P7Q|1|A|C|1609
7P7Q|1|A|C|1610
*
7P7Q|1|A|G|1613
7P7Q|1|A|A|1614
7P7Q|1|A|A|1615
7P7Q|1|A|A|1616
7P7Q|1|A|A|1617
7P7Q|1|A|G|1618
7P7Q|1|A|C|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2