J3_7P7R_009

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7R_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1442

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7P7R|1|A|U|1379
7P7R|1|A|C|1380
7P7R|1|A|G|1381
7P7R|1|A|G|1382
7P7R|1|A|G|1383
7P7R|1|A|A|1384
7P7R|1|A|C|1385
*
7P7R|1|A|G|1416
7P7R|1|A|A|1417
7P7R|1|A|C|1418
7P7R|1|A|A|1419
7P7R|1|A|A|1420
*
7P7R|1|A|U|1437
7P7R|1|A|A|1438

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23