J3_7P7U_034

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7U_034 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0926

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7P7U|1|A|G|1465
7P7U|1|A|G|1466
7P7U|1|A|G|1467
7P7U|1|A|A|1468
7P7U|1|A|C|1469
7P7U|1|A|G|1470
*
7P7U|1|A|C|1609
7P7U|1|A|C|1610
*
7P7U|1|A|G|1613
7P7U|1|A|A|1614
7P7U|1|A|A|1615
7P7U|1|A|A|1616
7P7U|1|A|A|1617
7P7U|1|A|G|1618
7P7U|1|A|C|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2