J3_7P7U_039

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7U_039 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1386

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7P7U|1|a|U|1100
7P7U|1|a|G|1101
*
7P7U|1|a|U|1110
7P7U|1|a|G|1111
7P7U|1|a|U|1112
7P7U|1|a|U|1113
*
7P7U|1|a|G|1126
7P7U|1|a|C|1127
7P7U|1|a|A|1128
7P7U|1|a|A|1129

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain f

30S ribosomal protein S5