J3_7PHC_007

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUAAG*CGAGAAC*GUAG

Length

16 nucleotides

Bulged bases

7PHC|1|3|A|1643

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PHC_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3776

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7PHC|1|3|C|1333
7PHC|1|3|U|1334
7PHC|1|3|A|1335
7PHC|1|3|A|1336
7PHC|1|3|G|1337
*
7PHC|1|3|C|1639
7PHC|1|3|G|1640
7PHC|1|3|A|1641
7PHC|1|3|G|1642
7PHC|1|3|A|1643
7PHC|1|3|A|1644
7PHC|1|3|C|1645
*
7PHC|1|3|G|1654
7PHC|1|3|U|1655
7PHC|1|3|A|1656
7PHC|1|3|G|1657

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34