J3_7PIA_004

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

7PIA|1|3|U|797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIA_004 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.452

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7PIA|1|3|C|733
7PIA|1|3|A|734
7PIA|1|3|G|735
*
7PIA|1|3|C|767
7PIA|1|3|G|768
7PIA|1|3|A|769
7PIA|1|3|A|770
7PIA|1|3|C|771
*
7PIA|1|3|G|795
7PIA|1|3|A|796
7PIA|1|3|U|797
7PIA|1|3|G|798

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2