J3_7PIB_002

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7PIB|1|3|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIB_002 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.251

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7PIB|1|3|C|273
7PIB|1|3|A|274
7PIB|1|3|A|275
7PIB|1|3|A|276
7PIB|1|3|C|277
*
7PIB|1|3|G|292
7PIB|1|3|G|293
7PIB|1|3|G|294
7PIB|1|3|U|295
7PIB|1|3|U|296
7PIB|1|3|G|297
7PIB|1|3|U|298
7PIB|1|3|A|299
*
7PIB|1|3|U|407
7PIB|1|3|G|408

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9