J3_7PIB_009

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*CUAAU*AGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIB_009 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.261

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7PIB|1|3|U|2098
7PIB|1|3|U|2099
7PIB|1|3|G|2100
*
7PIB|1|3|C|2204
7PIB|1|3|U|2205
7PIB|1|3|A|2206
7PIB|1|3|A|2207
7PIB|1|3|U|2208
*
7PIB|1|3|A|2231
7PIB|1|3|G|2232
7PIB|1|3|A|2233
7PIB|1|3|C|2234
7PIB|1|3|A|2235
7PIB|1|3|G|2236

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28