J3_7PIB_018
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUUAAUUC*GAAAAACCUUACC*GGGCUGC
- Length
- 29 nucleotides
- Bulged bases
- 7PIB|1|5|A|970, 7PIB|1|5|A|971, 7PIB|1|5|A|973
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIB_018 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.2465
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7PIB|1|5|G|949
7PIB|1|5|C|950
7PIB|1|5|U|951
7PIB|1|5|U|952
7PIB|1|5|A|953
7PIB|1|5|A|954
7PIB|1|5|U|955
7PIB|1|5|U|956
7PIB|1|5|C|957
*
7PIB|1|5|G|968
7PIB|1|5|A|969
7PIB|1|5|A|970
7PIB|1|5|A|971
7PIB|1|5|A|972
7PIB|1|5|A|973
7PIB|1|5|C|974
7PIB|1|5|C|975
7PIB|1|5|U|976
7PIB|1|5|U|977
7PIB|1|5|A|978
7PIB|1|5|C|979
7PIB|1|5|C|980
*
7PIB|1|5|G|1195
7PIB|1|5|G|1196
7PIB|1|5|G|1197
7PIB|1|5|C|1198
7PIB|1|5|U|1199
7PIB|1|5|G|1200
7PIB|1|5|C|1201
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain I
- 30S ribosomal protein S10
- Chain L
- 30S ribosomal protein S13
- Chain M
- 30S ribosomal protein S14 type Z
- Chain R
- 30S ribosomal protein S19
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