J3_7PIB_022
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7PIB|1|5|U|1215, 7PIB|1|5|U|1276
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIB_022 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.2639
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.2
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 6
Unit IDs
7PIB|1|5|C|1212
7PIB|1|5|A|1213
7PIB|1|5|A|1214
7PIB|1|5|U|1215
7PIB|1|5|G|1216
*
7PIB|1|5|C|1270
7PIB|1|5|U|1271
7PIB|1|5|C|1272
7PIB|1|5|A|1273
7PIB|1|5|G|1274
7PIB|1|5|U|1275
7PIB|1|5|U|1276
7PIB|1|5|C|1277
*
7PIB|1|5|G|1308
7PIB|1|5|U|1309
7PIB|1|5|C|1310
7PIB|1|5|G|1311
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S7
- Chain L
- 30S ribosomal protein S13
Coloring options: