J3_7PIR_004

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7PIR|1|3|G|721, 7PIR|1|3|G|827

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_004 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.3567

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PIR|1|3|U|718
7PIR|1|3|G|719
7PIR|1|3|A|720
7PIR|1|3|G|721
7PIR|1|3|C|722
7PIR|1|3|U|723
7PIR|1|3|A|724
*
7PIR|1|3|U|808
7PIR|1|3|A|809
7PIR|1|3|G|810
*
7PIR|1|3|C|826
7PIR|1|3|G|827
7PIR|1|3|A|828
7PIR|1|3|A|829

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain a

50S ribosomal protein L2