J3_7PIR_010
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- AUUG*CUAAU*AGACAGU
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_010 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3719
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PIR|1|3|A|2097
7PIR|1|3|U|2098
7PIR|1|3|U|2099
7PIR|1|3|G|2100
*
7PIR|1|3|C|2204
7PIR|1|3|U|2205
7PIR|1|3|A|2206
7PIR|1|3|A|2207
7PIR|1|3|U|2208
*
7PIR|1|3|A|2231
7PIR|1|3|G|2232
7PIR|1|3|A|2233
7PIR|1|3|C|2234
7PIR|1|3|A|2235
7PIR|1|3|G|2236
7PIR|1|3|U|2237
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
- Chain f
- 50S ribosomal protein L9
- Chain v
- 50S ribosomal protein L28
Coloring options: