J3_7PIR_011

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7PIR|1|3|A|2526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_011 not in the Motif Atlas

Homologous match to J3_8VTW_008

Geometric discrepancy: 0.4398

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7PIR|1|3|C|2525
7PIR|1|3|A|2526
7PIR|1|3|U|2527
7PIR|1|3|C|2528
*
7PIR|1|3|G|2553
7PIR|1|3|U|2554
7PIR|1|3|U|2555
*
7PIR|1|3|A|2569
7PIR|1|3|U|2570
7PIR|1|3|U|2571
7PIR|1|3|A|2572
7PIR|1|3|A|2573
7PIR|1|3|A|2574
7PIR|1|3|G|2575

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14