J3_7PIR_016
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 7PIR|1|5|U|720
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_016 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.3639
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7PIR|1|5|U|669
7PIR|1|5|G|670
*
7PIR|1|5|C|714
7PIR|1|5|A|715
7PIR|1|5|C|716
7PIR|1|5|C|717
7PIR|1|5|A|718
7PIR|1|5|G|719
7PIR|1|5|U|720
7PIR|1|5|G|721
7PIR|1|5|G|722
*
7PIR|1|5|C|729
7PIR|1|5|G|730
7PIR|1|5|A|731
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain E
- 30S ribosomal protein S6
- Chain J
- 30S ribosomal protein S11
- Chain Q
- 30S ribosomal protein S18
- Chain T
- 30S ribosomal protein S21
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