J3_7PIR_019
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- 7PIR|1|5|U|1056, 7PIR|1|5|G|1165
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_019 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.375
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7PIR|1|5|C|1054
7PIR|1|5|G|1055
7PIR|1|5|U|1056
7PIR|1|5|C|1057
7PIR|1|5|A|1058
7PIR|1|5|G|1059
*
7PIR|1|5|C|1098
7PIR|1|5|G|1099
7PIR|1|5|C|1100
7PIR|1|5|A|1101
7PIR|1|5|A|1102
7PIR|1|5|C|1103
7PIR|1|5|C|1104
*
7PIR|1|5|G|1162
7PIR|1|5|A|1163
7PIR|1|5|U|1164
7PIR|1|5|G|1165
7PIR|1|5|A|1166
7PIR|1|5|C|1167
7PIR|1|5|G|1168
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain A
- 30S ribosomal protein S2
- Chain B
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S5
- Chain H
- 30S ribosomal protein S9
- Chain I
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S14 type Z
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