J3_7PIR_024
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CUUG*CGAUAGCGAAACAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7PIR|1|3|U|36, 7PIR|1|3|U|484, 7PIR|1|3|C|492
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_024 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3714
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7PIR|1|3|C|34
7PIR|1|3|U|35
7PIR|1|3|U|36
7PIR|1|3|G|37
*
7PIR|1|3|C|481
7PIR|1|3|G|482
7PIR|1|3|A|483
7PIR|1|3|U|484
7PIR|1|3|A|485
7PIR|1|3|G|486
7PIR|1|3|C|487
7PIR|1|3|G|488
7PIR|1|3|A|489
7PIR|1|3|A|490
7PIR|1|3|A|491
7PIR|1|3|C|492
7PIR|1|3|A|493
7PIR|1|3|G|494
7PIR|1|3|U|495
7PIR|1|3|A|496
7PIR|1|3|C|497
*
7PIR|1|3|G|504
7PIR|1|3|G|505
7PIR|1|3|A|506
7PIR|1|3|A|507
7PIR|1|3|A|508
7PIR|1|3|G|509
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
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