J3_7PIR_025

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGAAG*CGCGCAAAAG*CGUAU

Length

20 nucleotides

Bulged bases

7PIR|1|3|A|355, 7PIR|1|3|A|358

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_025 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.325

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7PIR|1|3|A|331
7PIR|1|3|G|332
7PIR|1|3|A|333
7PIR|1|3|A|334
7PIR|1|3|G|335
*
7PIR|1|3|C|350
7PIR|1|3|G|351
7PIR|1|3|C|352
7PIR|1|3|G|353
7PIR|1|3|C|354
7PIR|1|3|A|355
7PIR|1|3|A|356
7PIR|1|3|A|357
7PIR|1|3|A|358
7PIR|1|3|G|359
*
7PIR|1|3|C|371
7PIR|1|3|G|372
7PIR|1|3|U|373
7PIR|1|3|A|374
7PIR|1|3|U|375

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain t

50S ribosomal protein L24