J3_7PIR_027

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUAAG*CGAGAAC*GUAG

Length

16 nucleotides

Bulged bases

7PIR|1|3|A|1643

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_027 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.425

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7PIR|1|3|C|1333
7PIR|1|3|U|1334
7PIR|1|3|A|1335
7PIR|1|3|A|1336
7PIR|1|3|G|1337
*
7PIR|1|3|C|1639
7PIR|1|3|G|1640
7PIR|1|3|A|1641
7PIR|1|3|G|1642
7PIR|1|3|A|1643
7PIR|1|3|A|1644
7PIR|1|3|C|1645
*
7PIR|1|3|G|1654
7PIR|1|3|U|1655
7PIR|1|3|A|1656
7PIR|1|3|G|1657

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34