J3_7PIR_028

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUGACA*UC*GAAAAGC

Length

15 nucleotides

Bulged bases

7PIR|1|3|C|1456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.4494

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7PIR|1|3|G|1452
7PIR|1|3|U|1453
7PIR|1|3|G|1454
7PIR|1|3|A|1455
7PIR|1|3|C|1456
7PIR|1|3|A|1457
*
7PIR|1|3|U|1598
7PIR|1|3|C|1599
*
7PIR|1|3|G|1602
7PIR|1|3|A|1603
7PIR|1|3|A|1604
7PIR|1|3|A|1605
7PIR|1|3|A|1606
7PIR|1|3|G|1607
7PIR|1|3|C|1608

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2