J3_7PJS_006

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJS_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0817

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7PJS|1|A|C|1298
7PJS|1|A|G|1299
7PJS|1|A|G|1300
7PJS|1|A|A|1301
7PJS|1|A|A|1302
7PJS|1|A|G|1303
*
7PJS|1|A|C|1625
7PJS|1|A|A|1626
7PJS|1|A|G|1627
*
7PJS|1|A|C|1639
7PJS|1|A|A|1640
7PJS|1|A|A|1641
7PJS|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains