J3_7PJT_035

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7PJT|1|a|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJT_035 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.253

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7PJT|1|a|C|990
7PJT|1|a|U|991
7PJT|1|a|U|992
7PJT|1|a|G|993
7PJT|1|a|A|994
7PJT|1|a|C|995
7PJT|1|a|A|996
7PJT|1|a|U|997
*
7PJT|1|a|A|1044
7PJT|1|a|C|1045
7PJT|1|a|A|1046
7PJT|1|a|G|1047
*
7PJT|1|a|C|1210
7PJT|1|a|U|1211
7PJT|1|a|U|1212
7PJT|1|a|A|1213
7PJT|1|a|C|1214
7PJT|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14