J3_7PJW_035

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUC*GUAU*AUUUAAAG

Length

16 nucleotides

Bulged bases

7PJW|1|A|A|2518, 7PJW|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJW_035 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.3208

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

7PJW|1|A|C|2517
7PJW|1|A|A|2518
7PJW|1|A|U|2519
7PJW|1|A|C|2520
*
7PJW|1|A|G|2545
7PJW|1|A|U|2546
7PJW|1|A|A|2547
7PJW|1|A|U|2548
*
7PJW|1|A|A|2560
7PJW|1|A|U|2561
7PJW|1|A|U|2562
7PJW|1|A|U|2563
7PJW|1|A|A|2564
7PJW|1|A|A|2565
7PJW|1|A|A|2566
7PJW|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14