J3_7PJX_008

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7PJX|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJX_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1398

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7PJX|1|A|C|1306
7PJX|1|A|A|1307
7PJX|1|A|A|1308
7PJX|1|A|G|1309
*
7PJX|1|A|C|1605
7PJX|1|A|C|1606
7PJX|1|A|C|1607
7PJX|1|A|A|1608
7PJX|1|A|A|1609
7PJX|1|A|A|1610
7PJX|1|A|C|1611
*
7PJX|1|A|G|1620
7PJX|1|A|U|1621
7PJX|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34