3D structure

PDB id
7PJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.5 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
7PJX|1|a|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7PJX_035 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.1386
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7PJX|1|a|C|586
7PJX|1|a|G|587
7PJX|1|a|G|588
*
7PJX|1|a|C|651
7PJX|1|a|U|652
7PJX|1|a|U|653
7PJX|1|a|G|654
7PJX|1|a|A|655
*
7PJX|1|a|U|751
7PJX|1|a|G|752
7PJX|1|a|A|753
7PJX|1|a|C|754
7PJX|1|a|G|755

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


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