J3_7PJZ_003

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJZ|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJZ_003 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1404

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJZ|1|A|G|297
7PJZ|1|A|G|298
7PJZ|1|A|A|299
7PJZ|1|A|A|300
7PJZ|1|A|G|301
*
7PJZ|1|A|C|316
7PJZ|1|A|G|317
7PJZ|1|A|C|318
7PJZ|1|A|G|319
7PJZ|1|A|A|320
7PJZ|1|A|U|321
7PJZ|1|A|A|322
7PJZ|1|A|C|323
7PJZ|1|A|A|324
7PJZ|1|A|G|325
*
7PJZ|1|A|C|337
7PJZ|1|A|G|338
7PJZ|1|A|U|339
7PJZ|1|A|A|340
7PJZ|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24