J3_7PKQ_002
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PKQ_002 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1884
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7PKQ|1|3|U|357
7PKQ|1|3|G|358
7PKQ|1|3|G|359
7PKQ|1|3|A|360
*
7PKQ|1|4|U|123
7PKQ|1|4|A|124
7PKQ|1|4|C|125
*
7PKQ|1|4|G|248
7PKQ|1|4|G|249
7PKQ|1|4|A|250
7PKQ|1|4|A|251
Current chains
- Chain 3
- S3 rRNA
- Chain 4
- S4 rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S9, chloroplastic
- Chain m
- Mitochondrial ribosomal protein S13
- Chain u
- Plastid-specific ribosomal protein 4
Coloring options: