J3_7PWO_001
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GUGAAAAG*CC*GC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_001 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1379
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7PWO|1|1|G|320
7PWO|1|1|U|321
7PWO|1|1|G|322
7PWO|1|1|A|323
7PWO|1|1|A|324
7PWO|1|1|A|325
7PWO|1|1|A|326
7PWO|1|1|G|327
*
7PWO|1|1|C|352
7PWO|1|1|C|353
*
7PWO|1|42|G|20
7PWO|1|42|C|21
Current chains
- Chain 1
- rRNA 28S
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain C2
- Ribosomal protein L4
- Chain P2
- Ribosomal protein L17
- Chain Y2
- Ribosomal protein L26
- Chain l2
- Ribosomal protein L39
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