J3_7PWO_003
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGAG*CGCCG*UCGGAG
- Length
- 15 nucleotides
- Bulged bases
- 7PWO|1|1|A|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_003 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1971
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7PWO|1|1|C|544
7PWO|1|1|G|545
7PWO|1|1|A|546
7PWO|1|1|G|547
*
7PWO|1|1|C|579
7PWO|1|1|G|580
7PWO|1|1|C|581
7PWO|1|1|C|582
7PWO|1|1|G|583
*
7PWO|1|1|U|608
7PWO|1|1|C|609
7PWO|1|1|G|610
7PWO|1|1|G|611
7PWO|1|1|A|612
7PWO|1|1|G|613
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain R2
- Ribosomal protein L19
- Chain g2
- Ribosomal protein L34
- Chain p2
- Ribosomal protein L37a
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