J3_7PWO_007
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UCGGGC*GGGAG*CA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_007 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1946
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7PWO|1|1|U|1209
7PWO|1|1|C|1210
7PWO|1|1|G|1211
7PWO|1|1|G|1212
7PWO|1|1|G|1213
7PWO|1|1|C|1214
*
7PWO|1|1|G|1263
7PWO|1|1|G|1264
7PWO|1|1|G|1265
7PWO|1|1|A|1266
7PWO|1|1|G|1267
*
7PWO|1|1|C|1284
7PWO|1|1|A|1285
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 42
- rRNA 5.8S
- Chain X2
- Ribosomal protein L23A
- Chain g2
- Ribosomal protein L34
- Chain k2
- Ribosomal L38e
- Chain l2
- Ribosomal protein L39
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