J3_7PWO_009
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CCUG*CUCAC*GGACCCG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_009 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3137
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PWO|1|1|C|1919
7PWO|1|1|C|1920
7PWO|1|1|U|1921
7PWO|1|1|G|1922
*
7PWO|1|1|C|1997
7PWO|1|1|U|1998
7PWO|1|1|C|1999
7PWO|1|1|A|2000
7PWO|1|1|C|2001
*
7PWO|1|1|G|2014
7PWO|1|1|G|2015
7PWO|1|1|A|2016
7PWO|1|1|C|2017
7PWO|1|1|C|2018
7PWO|1|1|C|2019
7PWO|1|1|G|2020
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain G2
- 60S ribosomal protein L7a
- Chain N2
- Ribosomal protein L15
- Chain i2
- Ribosomal protein L36-1
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