J3_7PWO_010
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 7PWO|1|1|C|2126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_010 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0926
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7PWO|1|1|C|2087
7PWO|1|1|U|2088
7PWO|1|1|C|2089
*
7PWO|1|1|G|2113
7PWO|1|1|A|2114
7PWO|1|1|G|2115
*
7PWO|1|1|C|2124
7PWO|1|1|A|2125
7PWO|1|1|C|2126
7PWO|1|1|A|2127
7PWO|1|1|A|2128
7PWO|1|1|G|2129
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D2
- Ribosomal protein L5
- Chain J2
- Ribosomal protein L11
- Chain T2
- Ribosomal protein L21
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