J3_7PWO_018
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_018 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1595
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PWO|1|2|U|910
7PWO|1|2|G|911
7PWO|1|2|G|912
7PWO|1|2|A|913
*
7PWO|1|2|U|1172
7PWO|1|2|A|1173
7PWO|1|2|C|1174
*
7PWO|1|2|G|1260
7PWO|1|2|7MG|1261
7PWO|1|2|A|1262
7PWO|1|2|A|1263
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain F1
- Ribosomal protein S5
- Chain Q1
- Ribosomal protein S16
- Chain S1
- Ribosomal protein S18
- Chain T1
- Ribosomal protein S19e
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