J3_7PWO_020
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UCCCAG*CGAGAC*GCGAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_020 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1314
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7PWO|1|2|U|1023
7PWO|1|2|C|1024
7PWO|1|2|C|1025
7PWO|1|2|C|1026
7PWO|1|2|A|1027
7PWO|1|2|G|1028
*
7PWO|1|2|C|1067
7PWO|1|2|G|1068
7PWO|1|2|A|1069
7PWO|1|2|G|1070
7PWO|1|2|A|1071
7PWO|1|2|C|1072
*
7PWO|1|2|G|1123
7PWO|1|2|C|1124
7PWO|1|2|G|1125
7PWO|1|2|A|1126
7PWO|1|2|U|1127
7PWO|1|2|A|1128
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain C1
- Ribosomal protein S2
- Chain D1
- Ribosomal protein S3
- Chain Q1
- Ribosomal protein S16
- Chain R1
- Ribosomal protein S17
- Chain U1
- Ribosomal protein S20
- Chain d1
- Ribosomal protein S29A
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