J3_7PWO_022
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGC*GGAC*GGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_022 not in the Motif Atlas
- Geometric match to J3_4V88_040
- Geometric discrepancy: 0.2565
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PWO|1|2|G|1076
7PWO|1|2|G|1077
7PWO|1|2|C|1078
*
7PWO|1|2|G|1092
7PWO|1|2|G|1093
7PWO|1|2|A|1094
7PWO|1|2|C|1095
*
7PWO|1|2|G|1117
7PWO|1|2|G|1118
7PWO|1|2|C|1119
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain F1
- Ribosomal protein S5
- Chain Q1
- Ribosomal protein S16
- Chain R1
- Ribosomal protein S17
- Chain U1
- Ribosomal protein S20
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