J3_7PWO_023

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CACUG*CGUGGCCG*CCAG

Length

17 nucleotides

Bulged bases

7PWO|1|2|U|1177, 7PWO|1|2|C|1227, 7PWO|1|2|C|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PWO_023 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.226

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|C|1174
7PWO|1|2|A|1175
7PWO|1|2|C|1176
7PWO|1|2|U|1177
7PWO|1|2|G|1178
*
7PWO|1|2|C|1221
7PWO|1|2|G|1222
7PWO|1|2|U|1223
7PWO|1|2|G|1224
7PWO|1|2|G|1225
7PWO|1|2|C|1226
7PWO|1|2|C|1227
7PWO|1|2|G|1228
*
7PWO|1|2|C|1257
7PWO|1|2|C|1258
7PWO|1|2|A|1259
7PWO|1|2|G|1260

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain F1

Ribosomal protein S5

Chain S1

Ribosomal protein S18

Chain T1

Ribosomal protein S19e