J3_7PWO_025
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GC*GAGACGC*GACCC
- Length
- 14 nucleotides
- Bulged bases
- 7PWO|1|42|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_025 not in the Motif Atlas
- Geometric match to J3_5TBW_071
- Geometric discrepancy: 0.37
- The information below is about J3_5TBW_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7PWO|1|42|G|45
7PWO|1|42|C|46
*
7PWO|1|42|G|59
7PWO|1|42|A|60
7PWO|1|42|G|61
7PWO|1|42|A|62
7PWO|1|42|C|63
7PWO|1|42|G|64
7PWO|1|42|C|65
*
7PWO|1|42|G|96
7PWO|1|42|A|97
7PWO|1|42|C|98
7PWO|1|42|C|99
7PWO|1|42|C|100
Current chains
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain X2
- Ribosomal protein L23A
- Chain h2
- Ribosomal protein L35
- Chain j2
- Ribosomal protein L37
- Chain l2
- Ribosomal protein L39
Coloring options: