J3_7PWO_028
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GUGAAAAGGACG*CCGCUCAAAAGACC*GC
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_028 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.2102
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7PWO|1|1|G|320
7PWO|1|1|U|321
7PWO|1|1|G|322
7PWO|1|1|A|323
7PWO|1|1|A|324
7PWO|1|1|A|325
7PWO|1|1|A|326
7PWO|1|1|G|327
7PWO|1|1|G|328
7PWO|1|1|A|329
7PWO|1|1|C|330
7PWO|1|1|G|331
*
7PWO|1|1|C|340
7PWO|1|1|C|341
7PWO|1|1|G|342
7PWO|1|1|C|343
7PWO|1|1|U|344
7PWO|1|1|C|345
7PWO|1|1|A|346
7PWO|1|1|A|347
7PWO|1|1|A|348
7PWO|1|1|A|349
7PWO|1|1|G|350
7PWO|1|1|A|351
7PWO|1|1|C|352
7PWO|1|1|C|353
*
7PWO|1|42|G|20
7PWO|1|42|C|21
Current chains
- Chain 1
- rRNA 28S
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain C2
- Ribosomal protein L4
- Chain P2
- Ribosomal protein L17
- Chain Y2
- Ribosomal protein L26
- Chain l2
- Ribosomal protein L39
Coloring options: