J3_7PZY_012

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PZY_012 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.0608

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7PZY|1|1|C|1627
7PZY|1|1|A|1628
*
7PZY|1|1|U|1637
7PZY|1|1|A|1638
7PZY|1|1|A|1639
7PZY|1|1|C|1640
7PZY|1|1|U|1641
*
7PZY|1|1|A|1806
7PZY|1|1|G|1807

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

Ribosomal 60S subunit protein L34B