J3_7PZY_028
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7PZY|1|A|A|1202, 7PZY|1|A|G|1431, 7PZY|1|A|C|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PZY_028 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.0664
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7PZY|1|A|C|1200
7PZY|1|A|C|1201
7PZY|1|A|A|1202
7PZY|1|A|G|1203
7PZY|1|A|A|1204
7PZY|1|A|C|1205
*
7PZY|1|A|G|1248
7PZY|1|A|G|1249
7PZY|1|A|G|1250
7PZY|1|A|U|1251
7PZY|1|A|G|1252
*
7PZY|1|A|U|1428
7PZY|1|A|U|1429
7PZY|1|A|A|1430
7PZY|1|A|G|1431
7PZY|1|A|A|1432
7PZY|1|A|C|1433
7PZY|1|A|G|1434
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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