J3_7Q08_020

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q08_020 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1124

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7Q08|1|A|A|41
7Q08|1|A|G|42
*
7Q08|1|A|C|431
7Q08|1|A|G|432
7Q08|1|A|C|433
7Q08|1|A|A|434
7Q08|1|A|A|435
7Q08|1|A|A|436
7Q08|1|A|U|437
*
7Q08|1|A|A|462
7Q08|1|A|G|463
7Q08|1|A|U|464

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Y

Ribosomal 40S subunit protein S23B