3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
CUAUG*CGUCACAGAG*CGUGCG
Length
21 nucleotides
Bulged bases
7Q08|1|1|C|209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7Q08_034 not in the Motif Atlas
Homologous match to J3_8C3A_046
Geometric discrepancy: 0.0822
The information below is about J3_8C3A_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_24131.1
Basepair signature
cWW-F-cSS-cHH-cWW-cWW-F-cWW-cSW-tHS-F-cWW
Number of instances in this motif group
2

Unit IDs

7Q08|1|1|C|184
7Q08|1|1|U|185
7Q08|1|1|A|186
7Q08|1|1|U|187
7Q08|1|1|G|188
*
7Q08|1|1|C|204
7Q08|1|1|G|205
7Q08|1|1|U|206
7Q08|1|1|C|207
7Q08|1|1|A|208
7Q08|1|1|C|209
7Q08|1|1|A|210
7Q08|1|1|G|211
7Q08|1|1|A|212
7Q08|1|1|G|213
*
7Q08|1|1|C|225
7Q08|1|1|G|226
7Q08|1|1|U|227
7Q08|1|1|G|228
7Q08|1|1|C|229
7Q08|1|1|G|230

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain 9
Ribosomal 60S subunit protein L26B
Chain l
Ribosomal 60S subunit protein L4B

Coloring options:


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