J3_7Q4K_017

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_017 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2454

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7Q4K|1|BA|G|1055
7Q4K|1|BA|G|1056
7Q4K|1|BA|A|1057
*
7Q4K|1|BA|U|1081
7Q4K|1|BA|U|1082
7Q4K|1|BA|U|1083
7Q4K|1|BA|A|1084
7Q4K|1|BA|A|1085
7Q4K|1|BA|A|1086
7Q4K|1|BA|G|1087
*
7Q4K|1|BA|C|1102
7Q4K|1|BA|A|1103
7Q4K|1|BA|C|1104

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36