J3_7Q4K_019

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7Q4K|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1043

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7Q4K|1|BA|C|1306
7Q4K|1|BA|A|1307
7Q4K|1|BA|A|1308
7Q4K|1|BA|G|1309
*
7Q4K|1|BA|C|1605
7Q4K|1|BA|C|1606
7Q4K|1|BA|C|1607
7Q4K|1|BA|A|1608
7Q4K|1|BA|A|1609
7Q4K|1|BA|A|1610
7Q4K|1|BA|C|1611
*
7Q4K|1|BA|G|1620
7Q4K|1|BA|U|1621
7Q4K|1|BA|G|1622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34