J3_7Q4K_034

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_034 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0779

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7Q4K|1|BA|G|1424
7Q4K|1|BA|G|1425
7Q4K|1|BA|G|1426
7Q4K|1|BA|A|1427
7Q4K|1|BA|C|1428
7Q4K|1|BA|G|1429
*
7Q4K|1|BA|C|1564
7Q4K|1|BA|C|1565
*
7Q4K|1|BA|G|1568
7Q4K|1|BA|A|1569
7Q4K|1|BA|A|1570
7Q4K|1|BA|A|1571
7Q4K|1|BA|A|1572
7Q4K|1|BA|G|1573
7Q4K|1|BA|C|1574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2