J3_7QCA_005

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAGGAG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7QCA|1|L50|G|1149

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QCA_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1345

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7QCA|1|L50|U|1146
7QCA|1|L50|G|1147
7QCA|1|L50|A|1148
7QCA|1|L50|G|1149
7QCA|1|L50|G|1150
7QCA|1|L50|A|1151
7QCA|1|L50|G|1152
*
7QCA|1|L50|C|1465
7QCA|1|L50|A|1466
7QCA|1|L50|A|1467
*
7QCA|1|L50|U|1479
7QCA|1|L50|C|1480
7QCA|1|L50|U|1481
7QCA|1|L50|A|1482

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LGG

Ribosomal protein L34

Chain LR0

60S ribosomal protein L19