J3_7QCA_031

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGACA*UC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QCA_031 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1396

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|C|1279
7QCA|1|L50|G|1280
7QCA|1|L50|A|1281
7QCA|1|L50|C|1282
7QCA|1|L50|A|1283
*
7QCA|1|L50|U|1410
7QCA|1|L50|C|1411
*
7QCA|1|L50|G|1415
7QCA|1|L50|A|1416
7QCA|1|L50|A|1417
7QCA|1|L50|A|1418
7QCA|1|L50|A|1419
7QCA|1|L50|G|1420

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LGG

Ribosomal protein L34

Chain LPP

60S ribosomal protein L37a