J3_7QCA_032

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAC*GCCUAGCGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

7QCA|1|L50|U|2165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QCA_032 not in the Motif Atlas

Homologous match to J3_8P9A_061

Geometric discrepancy: 0.1329

The information below is about J3_8P9A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.2

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|G|2022
7QCA|1|L50|A|2023
7QCA|1|L50|C|2024
*
7QCA|1|L50|G|2123
7QCA|1|L50|C|2124
7QCA|1|L50|C|2125
7QCA|1|L50|U|2126
7QCA|1|L50|A|2127
7QCA|1|L50|G|2128
7QCA|1|L50|C|2129
7QCA|1|L50|G|2130
7QCA|1|L50|A|2131
7QCA|1|L50|U|2132
7QCA|1|L50|C|2133
7QCA|1|L50|C|2134
*
7QCA|1|L50|G|2161
7QCA|1|L50|G|2162
7QCA|1|L50|U|2163
7QCA|1|L50|G|2164
7QCA|1|L50|U|2165
7QCA|1|L50|C|2166

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LOO

60S ribosomal protein L44

Chain LT0

60s ribosomal protein L21