J3_7QG8_005

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QG8_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7QG8|1|0|C|936
7QG8|1|0|A|937
7QG8|1|0|A|938
7QG8|1|0|G|939
*
7QG8|1|0|C|1344
7QG8|1|0|U|1345
7QG8|1|0|A|1346
7QG8|1|0|G|1347
7QG8|1|0|U|1348
7QG8|1|0|A|1349
7QG8|1|0|A|1350
*
7QG8|1|0|U|1372
7QG8|1|0|G|1373
7QG8|1|0|A|1374
7QG8|1|0|A|1375
7QG8|1|0|U|1376
7QG8|1|0|A|1377
7QG8|1|0|C|1378
7QG8|1|0|G|1379

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S7

Chain 8

30S ribosomal protein S9