J3_7QGH_033

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7QGH|1|N|U|34, 7QGH|1|N|U|448, 7QGH|1|N|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGH_033 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0952

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7QGH|1|N|C|32
7QGH|1|N|C|33
7QGH|1|N|U|34
7QGH|1|N|G|35
*
7QGH|1|N|C|445
7QGH|1|N|G|446
7QGH|1|N|A|447
7QGH|1|N|U|448
7QGH|1|N|A|449
7QGH|1|N|G|450
7QGH|1|N|U|451
7QGH|1|N|G|452
7QGH|1|N|A|453
7QGH|1|N|A|454
7QGH|1|N|C|455
7QGH|1|N|C|456
7QGH|1|N|A|457
7QGH|1|N|G|458
7QGH|1|N|U|459
7QGH|1|N|A|460
7QGH|1|N|C|461
*
7QGH|1|N|G|468
7QGH|1|N|G|469
7QGH|1|N|A|470
7QGH|1|N|A|471
7QGH|1|N|A|472
7QGH|1|N|G|473

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain d

50S ribosomal protein L20

Chain g

50S ribosomal protein L23

Chain p

50S ribosomal protein L34